Book The Best Hotels in Southern Minnesota, MN for 2026 from CA $94 - Fully Refundable Options

A calm lake with a row of canoes on the shore and a single canoe on the water.

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Go beyond your typical stay in Southern Minnesota

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Our top choices for Southern Minnesota hotels

An indoor swimming pool with a curved design, surrounded by palm trees and a white pool ladder.

A modern hotel lobby with a reception desk, a digital information kiosk, and a patterned floor.

A modern interior with a fireplace, a green armchair, and a patterned rug.

A modern hotel with a prominent neon sign, multiple floors, and a well-maintained lawn area.

1. Treasure Island Resort & Casino

Welch

Gina

CA $111

CA $139 total

includes taxes & fees

Oct 12 - Oct 13

A hotel room with a bed, desk, and window.

A modern, compact living space with a grey sofa, a wooden dining table, and a kitchen area with a microwave.

A Microtel hotel with a modern design, featuring multiple floors and a parking lot.

A modern hotel lobby with a reception desk, seating area, and large windows.

2. Microtel Inn & Suites by Wyndham New Ulm

New Ulm

Cathy

CA $109

CA $120 total

includes taxes & fees

Sep 27 - Sep 28

A spacious indoor pool area with multiple levels, a hot tub, and a seating area with tables and chairs.

A reception area with two counters, a green wall with branch designs, and a tiled floor.

A hotel room with a bed, a sofa, an ottoman, a nightstand, a lamp, and a framed picture on the wall.

A hotel with a covered entrance, a parking lot, and a clear sky.

3. Best Western Plus New Ulm

New Ulm

Dolly

CA $168

CA $186 total

includes taxes & fees

Oct 18 - Oct 19

A hotel with a modern facade, a covered entrance, and a parking lot.

A swimming pool with lounge chairs and a table, surrounded by windows and a tiled wall.

An indoor swimming pool with lounge chairs and a sunbed, surrounded by walls with patterned tiles.

A hotel room with a bed, a sofa, a desk, and a TV.

4. AmericInn By Wyndham Mountain Lake Mn

Mountain Lake

CA $179

CA $196 total

includes taxes & fees

Oct 7 - Oct 8

An indoor swimming pool with clear water, wooden ceiling beams, and a tiled floor.

An outdoor patio with a grill, table, and chairs, surrounded by greenery and a clear sky.

A hotel room with a bed, a TV, a desk, a chair, a green ottoman, a nightstand, a lamp, and a painting on the wall.

A restaurant with multiple tables and chairs, a kitchen area, and a ceiling fan.

5. Super 8 by Wyndham St. James

Saint James

Jon

CA $127

CA $139 total

includes taxes & fees

Oct 4 - Oct 5

A hotel lobby with a marble counter, coffee dispensers, and a staircase.

A gym with treadmills, a stationary bike, and a pool area visible through large windows.

A spacious indoor area with multiple wooden tables and chairs, a stone fireplace, and a balcony with a railing.

A hotel room with a large bed, a desk, a chair, a television, and a dresser.

6. AmericInn by Wyndham Mankato Event Center

Mankato

richard

CA $111

CA $124 total

includes taxes & fees

Oct 25 - Oct 26

An Iron Skillet restaurant with a stone wall and a grill area.

A spacious lobby with a blue sofa, red chairs, a wooden coffee table, and a painting on the wall.

An indoor swimming pool with clear water, wooden ceiling beams, and large windows.

7. Comfort Inn Albert Lea at Trails Travel Center

Albert Lea

Douglas

CA $125

CA $142 total

includes taxes & fees

Oct 20 - Oct 21

An outdoor patio area with a fire pit, seating, and a pergola.

A modern lobby with a wooden reception desk, a staircase, and a seating area with two chairs.

A Country Inn & Suites building with a covered entrance, multiple windows, and a flagpole.

An indoor swimming pool with wooden walls and tiled flooring, surrounded by seating areas and doors.

8. Country Inn & Suites by Radisson, Albert Lea - Austin

Albert Lea

Moss

CA $125

CA $138 total

includes taxes & fees

Oct 18 - Oct 19

A modern living room with a stone fireplace, a ceiling fan, and a large window.

A building with a stone facade and a sign for 'Nichols Inn & Suites'.

A neatly made bed with a white bedspread, two pillows with a floral design, a wooden nightstand with a lamp, and a carpeted floor.

A reception area with a stone wall, wooden reception desk, and a clock on the wall.

9. Nichols Inn of Red Wing

Red Wing

Dave

CA $113

CA $125 total

includes taxes & fees

Sep 27 - Sep 28

A hotel room with a large bed, a desk with a chair, a window with a view of the outdoors, and two bedside lamps.

A reception desk with a wooden finish, a large illuminated 'C' sign, and a modern light fixture on the ceiling.

A gym with treadmills, elliptical machines, and a stationary bike.

An indoor swimming pool with a checkered tile wall, a door labeled 'Mechanical Room,' and a window with a view outside.

10. Comfort Inn & Suites Rochester South Mayo Clinic

Rochester

JOSEPH

CA $109

CA $126 total

includes taxes & fees

Oct 25 - Oct 26

A hotel entrance with a stone facade, a covered walkway, and a clear sign indicating a 13'-2" clearance.

A hotel lobby with wooden chairs and tables, a reception desk, and artwork on the walls.

A hotel lobby with a reception desk, seating area, and a large potted plant.

A modern hotel lobby with a sofa set, a coffee table, and a wall-mounted picture shelf.

11. Sleep Inn & Suites Marshall - University Area

Marshall

Jose

CA $131

CA $146 total

includes taxes & fees

Oct 25 - Oct 26

An outdoor seating area with wicker chairs and tables, surrounded by vibrant flowers and a red umbrella.

A rustic bar area with wooden beams, a wooden counter, and sacks of grain.

A bedroom with a large bed, a bathtub, a wooden rocking chair, and a desk with a lamp.

A cozy living room with a fireplace, a staircase, and a dining area.

12. Stone Mill Hotel & Suites

Lanesboro

CA $148

CA $159 total

includes taxes & fees

Oct 18 - Oct 19

A modern restaurant with a central counter, seating area, and a clock on the wall.

A hotel with a parking lot, multiple vehicles, and a well-maintained lawn.

A reception area with a stone wall, a flat-screen TV, a clock, and a seating area with patterned chairs.

A hotel room with three beds, a desk, and a patterned carpet.

13. Best Western Plus Albert Lea I-90/I-35 Hotel

Albert Lea

James

CA $118

CA $131 total

includes taxes & fees

Oct 11 - Oct 12

A hotel room with two beds, a desk, a chair, a sofa, and a window with blinds.

An indoor swimming pool with clear water, surrounded by a tiled floor and a safety railing. There are windows allowing natural light and a sign indicating pool capacity.

A modern living room with a sofa, armchair, and a flat-screen TV mounted on the wall.

A coffee station with two coffee machines and a display of coffee products.

14. Holiday Inn Express & Suites Worthington by IHG

Worthington

Dan

CA $173

CA $191 total

includes taxes & fees

Oct 25 - Oct 26

A compact kitchen with a microwave, stove, and refrigerator. A sofa is positioned in the living area, and a window provides natural light.

A breakfast bar with coffee machines, a refrigerator stocked with milk and juice, and a sign indicating no smoking.

A hotel lobby with a reception desk, seating area, and artwork on the walls.

A spacious room with a large window, a fireplace, and a seating area with a blue patterned carpet.

15. Super 8 by Wyndham Jackson MN

Jackson

Frank

CA $102

CA $113 total

includes taxes & fees

Oct 16 - Oct 17

A hotel room with a large bed, a bedside table, a lamp, a wall-mounted picture, and a bathtub.

A hotel room with a grey sofa, a small table with a coffee maker, a trash bin, and a door. There are three framed pictures on the wall.

A hotel room with a flat-screen TV, a desk with a lamp, a chair, and a door with a number.

An indoor swimming pool with a 3ft 1in depth sign, lounge chairs, and a view of the outside.

16. AmericInn by Wyndham Windom

Windom

Carol

CA $209

CA $230 total

includes taxes & fees

Oct 4 - Oct 5

A hotel room with a bed, a desk, a microwave, and a refrigerator.

A swimming pool with lounge chairs and a pool ladder.

A gym with treadmills, elliptical machines, and a weight bench.

A spacious lobby with a stone wall, a flat-screen TV, a fireplace, a blue sofa, and a wooden coffee table.

17. Comfort Suites and Conference Center

Worthington

Ross

CA $190

CA $210 total

includes taxes & fees

Oct 25 - Oct 26

A modern dining area with high tables, chairs, and pendant lighting.

A multi-story hotel with a modern design, featuring a prominent entrance with a covered area and a parking lot in front.

A reception desk with a large digital screen displaying a cityscape and the word "happy."

A swimming pool with a tiled deck, sun loungers, and a lifeguard chair.

18. Hampton Inn & Suites Rochester-North

Rochester

Dr. Tim

CA $145

CA $167 total

includes taxes & fees

Oct 4 - Oct 5

A spacious lobby with a fireplace, a chandelier, and a 'Welcome' sign.

A pool area with a wooden ceiling, a sofa, chairs, a table, and a plant.

A buffet setup with three hot entree stations, a sign indicating opening times, and a chalkboard sign with a rooster decoration.

A hotel room with two beds, a desk, a chair, a TV, and a window with curtains.

19. Redwood Lodge

Redwood Falls

Lisa

CA $146

CA $161 total

includes taxes & fees

Oct 11 - Oct 12

A Comfort Inn & Suites building with a covered entrance, numbered 2000, and a parking lot with cars.

A room with a large sliding glass door leading to an outdoor patio with tables and chairs, potted plants, and a view of trees and grass.

A modern hotel lobby with blue armchairs, round tables, and a patterned carpet.

A lobby with a blue sofa, red chairs, a TV mounted on a textured wall, and a fireplace below it.

20. Comfort Inn & Suites North Mankato

Mankato

Amy

CA $132

CA $147 total

includes taxes & fees

Oct 25 - Oct 26

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Vacation Rentals in Southern Minnesota

Apartment

A bedroom with a large bed, a TV on a dresser, and a view of the city through large windows.

A multi-story building with the sign 'Broadway Plaza' indicating a commercial or hotel property.

A modern kitchen with wooden cabinets, a granite countertop, and a stainless steel stove.

An indoor swimming pool with a clock on the wall, lounge chairs, and a lifeguard warning sign.

Broadway Plaza, Trademark Collection by Wyndham

Downtown Rochester

"As always excellent staff, clean and comfortable rooms. Great central location. "

Aparthotel

A spacious living area with a modern staircase, leather sofas, and contemporary lighting.

An outdoor seating area with blue sofas and wicker chairs, a wooden table, and green ottomans on a tiled patio.

A modern pool table in a spacious, well-lit room with large windows and a bar area.

A modern interior with a large dining table, sofas, and a kitchen area.

The Berkman

Folwell

"Nice property."

Apartment

A wooden interior with a kitchen, bar area, and a staircase.

A modern kitchen with stainless steel appliances, wooden cabinets, and a stone tile floor.

A two-story building with a storefront featuring a sign for coffee, ice cream, and craft drinks. There are steps leading to the entrance, a bench outside, and potted plants.

A wooden cabin interior with a bed, a ceiling light, and a window.

Steps to Marina & Beach: Couples Cottage in Pepin

Pepin

"Great location and very well furnished with new appliances."

Apartment

A modern kitchen with a central island, bar stools, and a large window.

A deck with two wooden chairs and a fire pit.

A spacious living room with a large sofa set, a wooden coffee table, and a large window.

A spacious living area with a large sofa, a coffee table, and a dining table with chairs. There is a ceiling fan and a floor lamp.

1 Block to Lake City Marina: Condo w/ Rooftop Deck

Lake City

"Loved the location and condo itself"

Apartment

A two-story building with a green exterior, a covered porch, and a driveway leading to a garage.

A room with a large window, a flat-screen TV mounted on the wall, a fluffy chair, a small round table, and a chair with a basket.

A bed with a white blanket and patterned pillows, a framed picture on the wall, and a window with a view.

A modern kitchen with stainless steel appliances, wooden cabinets, and a dishwasher.

Northfield Apt Close to Downtown: Winter Walk

Northfield

"It was amazing!"

Apartment

A bedroom with a bed, a chair, a table, a fireplace, and a ceiling fan.

A kitchen with wooden cabinets, stainless steel appliances, and a dining table with chairs.

A single-story house with a front porch, a small staircase leading to a deck, and a stone retaining wall.

A living room with a fireplace, a television mounted above it, and a large window offering a view of the outdoors.

Pet-friendly Wabasha Studio: Boat, Ski & Explore!

Wabasha

"Great property! Very convenient location as well."

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Stay near popular Southern Minnesota attractions

Forestville Mystery Cave State Park

9.0/10 (22 reviews)

Commune with nature and explore the great outdoors at Forestville Mystery Cave State Park during your travels in Preston. Wander the parks or discover the area's countryside.

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Mayo Civic Center

9.2/10 (818 reviews)

Catch an event at Mayo Civic Center during your trip to Rochester. Attend a sporting event or simply visit the area's shops.

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Mayo Clinic Health System Event Center

8.8/10 (246 reviews)

Catch an event at Mayo Clinic Health System Event Center during your trip to Mankato. Discover the coffeehouses and its entertainment venues while you're in the area.

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Apache Mall

8.6/10 (1,101 reviews)

During your visit to Rochester, you can do some window-shopping at Apache Mall. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.

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Laura Ingalls Wilder Museum

9.0/10 (33 reviews)

You can spend time exploring the galleries in Laura Ingalls Wilder Museum during your travels in Walnut Grove. Take in the museums while you're in the area.

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National Volleyball Center

7.8/10 (151 reviews)

Catch an event at National Volleyball Center during your trip to Rochester. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.

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Rochester Recreation Center

8.0/10 (205 reviews)

Catch an event at Rochester Recreation Center during your trip to Rochester. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.

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Welch Village Ski Area

8.6/10 (16 reviews)

Hit the slopes in Welch with a visit to Welch Village Ski Area. Stroll along the area's riverfront or simply enjoy its coffeehouses.

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Learn more about Southern Minnesota

Discover the family-friendly area of Southern Minnesota—an opera house, a college vibe, and sights from Mount Kato Ski Area to Blakeslee Stadium.

See all hotels in Southern Minnesota

A cityscape with a river, a bridge, and a prominent building with a clock tower.

Top Southern Minnesota Hotel Reviews

Hyatt House Rochester/Mayo Clinic Area

10/10 Excellent

"This place will be my cozy retreat whenever I’m in Rochester. I had such a wonderful time during my 9-day visit! Jenni and Johnny (aka Johnny Cash) were incredibly kind and always ready to lend a hand. When navigating health issues a friendly face and helpful staff and feeling as though you matter changes everything. Breakfast items changed everyday and were tasty, but my favorite part had to be the evening soup Mon - Thu at 5:30p while supplies last. LOL"

Kahler Inn and Suites - Mayo Clinic Area

8/10 Good

"Room was clean"

Centerstone Plaza Hotel Soldiers Field - Mayo Clinic Area

8/10 Good

"I will always stay here when I am visiting my childhood home. It is just very comfortable!! Like coming home... thanks to all the staff! Sincerely, Jim Reardon"

Motel 6 Mankato, MN

10/10 Excellent

"We again had medical appointments for the day, and this Motel 6 was close by. We've stayed here numerous times and enjoyed the comfort and caring staff. Rooms are always clean and the outside landscape area is always looking good. This will be our go to Motel when we are in the area."

AmericInn by Wyndham Mankato Event Center

10/10 Excellent

"Staff were very helpful and always friendly. Our room was clean and comfortable and we felt safe in the area. The breakfast was very good. We would come again!"

EVEN Hotel Rochester - Mayo Clinic Area by IHG

10/10 Excellent

"Great breakfast"

Best Western Rochester Hotel Mayo Clinic Area/St. Mary's

10/10 Excellent

"We enjoyed our stay. The breakfast was wonderful. We were disappointed the hot tub only ran for the first evening though and was down for maintenance after. And the exercise room was a bit grimy"

Boarders Inn & Suites by Cobblestone Hotels - Faribault

8/10 Good

"Sheets had some stains on them and dog hair was still all over the floor as it was on my socks and got all over the bed but overall a good stay"

SpringHill Suites by Marriott Rochester-Mayo Clinic/St Marys

10/10 Excellent

"Was there for a surgery at the Mayo and they were so helpful and accommodating. Very grateful for the facility and the staff"

More cheap stays in Southern Minnesota

Birch Hill Suite Rochester – Med City

3595 Commercial Drive SW Rochester MN

CA $82

CA $94 total

Oct 11 - Oct 12

includes taxes & fees

Motel 6 Mankato, MN

1731 Premier DR Mankato MN

CA $97

CA $108 total

Oct 21 - Oct 22

includes taxes & fees

9.4/10 Exceptional! (1,002 reviews)

Med City Inn & Suites - Mayo Clinic Area

435 16th Ave Nw Rochester MN

CA $101

CA $116 total

Sep 27 - Sep 28

includes taxes & fees

Boarders Inn & Suites by Cobblestone Hotels - Faribault

1801 Lavender Dr Faribault MN

CA $108

CA $119 total

Sep 29 - Sep 30

includes taxes & fees

7.8/10 Good! (1,002 reviews)

Country Inn & Suites by Radisson, Albert Lea - Austin

2214 E Main St Albert Lea MN

CA $125

CA $138 total

Oct 18 - Oct 19

includes taxes & fees

Brentwood Inn & Suites

123 Fourth Ave. NW Rochester MN

CA $133

CA $153 total

Sep 26 - Sep 27

includes taxes & fees

Hotels in Southern Minnesota with star rating

Explore a world of travel with Expedia

Book Hotels in Southern Minnesota on Expedia.com

Find hotels in Southern Minnesota, MN from CA $94

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Southern Minnesota

Check prices for these dates

Filter by

Star rating

Guest rating

Our top choices for Southern Minnesota hotels

1. Treasure Island Resort & Casino

2. Microtel Inn & Suites by Wyndham New Ulm

3. Best Western Plus New Ulm

4. AmericInn By Wyndham Mountain Lake Mn

5. Super 8 by Wyndham St. James

6. AmericInn by Wyndham Mankato Event Center

7. Comfort Inn Albert Lea at Trails Travel Center

8. Country Inn & Suites by Radisson, Albert Lea - Austin

9. Nichols Inn of Red Wing

10. Comfort Inn & Suites Rochester South Mayo Clinic

11. Sleep Inn & Suites Marshall - University Area

12. Stone Mill Hotel & Suites

13. Best Western Plus Albert Lea I-90/I-35 Hotel

14. Holiday Inn Express & Suites Worthington by IHG

15. Super 8 by Wyndham Jackson MN

16. AmericInn by Wyndham Windom

17. Comfort Suites and Conference Center

18. Hampton Inn & Suites Rochester-North

19. Redwood Lodge

20. Comfort Inn & Suites North Mankato

Vacation Rentals in Southern Minnesota

Broadway Plaza, Trademark Collection by Wyndham

The Berkman

Steps to Marina & Beach: Couples Cottage in Pepin

1 Block to Lake City Marina: Condo w/ Rooftop Deck

Northfield Apt Close to Downtown: Winter Walk

Pet-friendly Wabasha Studio: Boat, Ski & Explore!

Stay near popular Southern Minnesota attractions

Forestville Mystery Cave State Park

Mayo Civic Center

Mayo Clinic Health System Event Center

Apache Mall

Laura Ingalls Wilder Museum

National Volleyball Center

Rochester Recreation Center

Welch Village Ski Area

Learn more about Southern Minnesota

Top Southern Minnesota Hotel Reviews

Hyatt House Rochester/Mayo Clinic Area

Kahler Inn and Suites - Mayo Clinic Area

Centerstone Plaza Hotel Soldiers Field - Mayo Clinic Area

Motel 6 Mankato, MN

AmericInn by Wyndham Mankato Event Center

EVEN Hotel Rochester - Mayo Clinic Area by IHG

Best Western Rochester Hotel Mayo Clinic Area/St. Mary's

Boarders Inn & Suites by Cobblestone Hotels - Faribault

SpringHill Suites by Marriott Rochester-Mayo Clinic/St Marys

More cheap stays in Southern Minnesota

Birch Hill Suite Rochester – Med City

Motel 6 Mankato, MN

Med City Inn & Suites - Mayo Clinic Area

Boarders Inn & Suites by Cobblestone Hotels - Faribault

Country Inn & Suites by Radisson, Albert Lea - Austin

Brentwood Inn & Suites

Hotels in Southern Minnesota with star rating

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